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5 Questions which can teach you Multiple Regression (with R and Python)

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A journey of thousand miles begin with a single step. In a similar way, the journey of mastering machine learning algorithms begins ideally with Regression. It is simple to understand, and gets you started with predictive modeling quickly. While this ease is good for a beginner, I always advice them to also understand the working of regression before they start using it.

Lately, I have seen a lot of beginners, who just focus on learning how to perform regression (in R or Python) but not on the actual science behind it. I am not blaming the beginners alone. Here is a script from a 2 day course on machine learning:

Running regression in Python and R doesn’t take more than 3-4 lines of code. All you need to do is, pass the variables, run the script and get the predicted values. And congratulations! You’ve run your first machine learning algorithm.

The course literally spends no time even explaining this simple algorithm, but covers neural networks as part of the course. What a waste of resources!

So, in this article, I’ve explained regression in a very simple manner. I have covered the basics, so that you not only understand what is regression and how it works, but also how to compute the popular R² and the science behind it.

Just a word of caution, you can’t use it all types of situation. Simple regression has some limitations, which can be overcome by using advanced regression techniques.

multiple regression guide for beginners in R and python

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What is Linear Regression?

Linear Regression is used for predictive analysis. It is a technique which explains the degree of relationship between two or more variables (multiple regression, in that case) using a best fit line / plane. Simple Linear Regression is used when we have, one independent variable and one dependent variable.

Regression technique tries to fit a single line through a scatter plot (see below).  The simplest form of regression with one dependent and one independent variable is defined by the formula:

Y = aX + b

Let’s understand this equation using the scatter plot below:


Above, you can see that a black line passes through the data points. Now, you carefully notice that this line intersects the data points at coordinates (0,0), (4,8) and (30,60). Here’s a question. Find the equation that describe this line? Your answer should be:

Y= a * X + b

Now, find the value of a and b?

With out going in its working, the outcome after solving these equations is:

 a = 2, b = 0

Hence, our regression equation becomes: Y= 2*X + 0 i.e. Y= 2*X

Here, Slope = 8/4 =2 or 60/30 =2 and Intercept = 0 (as Y =0 when x is 0). So, equation would be

Y = 2*X + 0

This equation is known as linear regression equation, where Y is target variable, X is input variable. ‘a’ is known as slope and ‘b’ as intercept. It  is used to estimate real values (cost of houses, number of calls, total sales etc.) based on input variable(s). Here, we establish relationship between independent and dependent variables by fitting a best line. This best fit line is known as regression line and represented by a linear equation Y= a *X + b.

Now, you might think that in above example, there can be multiple regression lines those can pass through the data points. So, how to choose the best fit line or value of co-efficients a and b.

Let’s look at the methods to find the best fit line.


How to find the best regression line?

We discussed above that regression line establishes a relationship between independent and dependent variable(s). A line which can explain the relationship better is said to be best fit line.

In other words, the best fit line tends to return most accurate value of Y based on X  i.e. causing a minimum difference between actual and predicted value of Y (lower prediction error). Make sure you understand the image below.


Here are some methods which check for error:

  • Sum of all errors (∑error)
  • Sum of absolute value of all errors (∑|error|)
  • Sum of square of all errors (∑error^2)

Let’s evaluate performance of above discussed methods using an example. Below I have plotted three lines (y=2.3x+4, y=1.8x+3.5 and y=2x+8) to find the relationship between y and x.Linear7

Table shown below calculates the error value of each data point and the total error value (E) using the three methods discussed above:


After looking at the table, the following inferences can be generated:

  • Sum of all errors (∑error): Using this method leads to cancellation of positive and negative errors, which certainly isn’t our motive. Hence, it is not the right method.
  • The other two methods perform well but, if you notice, ∑error^2, we penalize the error value much more compared to ∑|error|. You can see that two equations has almost similar value for ∑|error| whereas in case of ∑error^2 there is significant difference.

Therefore, we can say that these coefficients a and b are derived based on minimizing the sum of squared difference of distance between data points and regression line.

There are two common algorithms to find the right coefficients for minimum sum of squared errors, first one is Ordinary Least Sqaure (OLS, used in python library sklearn) and other one is gradient descent.


What are the performance evaluation metrics in Regression?

As discussed above, to evaluate the performance of regression line, we should look at the minimum sum of squared errors (SSE). It works well but when it has one concern!

Let’s understand it using the table shown below:



Above you can see, we’ve removed 4 data points in right table and therefore the SSE has reduced (with same regression line). Further, if you look at the scatter plot, removed data points have almost similar relationship between x and y. It means that SSE is highly sensitive to number of data points.

Other metric to evaluate the performance of linear regression is R-square and most common metric to judge the performance of regression models. R² measures, “How much the change in output variable (y) is explained by the change in input variable(x).

R-squared is always between 0 and 1:

  • 0 indicates that the model explains NIL variability in the response data around its mean.
  • 1 indicates that the model explains full variability in the response data around its mean.

In general, higher the R², more robust will be the model. However, there are important conditions for this guideline that I’ll talk about in my future posts..

Let’s  take the above example again and calculate the value of R-square.


As you can see, R² has less variation in score compare to SSE.

One disadvantage of R-squared is that it can only increase as predictors are added to the regression model. This increase is artificial when predictors are not actually improving the model’s fit. To cure this, we use “Adjusted R-squared”.

Adjusted R-squared is nothing but the change of R-square that adjusts the number of terms in a model. Adjusted R square calculates the proportion of the variation in the dependent variable accounted by the explanatory variables. It incorporates the model’s degrees of freedom. Adjusted R-squared will decrease as predictors are added if the increase in model fit does not make up for the loss of degrees of freedom. Likewise, it will increase as predictors are added if the increase in model fit is worthwhile. Adjusted R-squared should always be used with models with more than one predictor variable. It is interpreted as the proportion of total variance that is explained by the model.

Adjusted R-Squre


What is Multi-Variate Regression?

Let’s now examine the process to deal with multiple independent variables related to a dependent variable.

Once you have identified the level of significance between independent variables(IV) and dependent variables(DV), use these significant IVs to make more powerful and accurate predictions. This technique is known as  “Multi-variate Regression”.

Let’s take an example here to understand this concept further.

We know that, compensation of a person depends on his age i.e. the older one gets, the higher he/she earns as compared to previous year. You build a simple regression model to explain this effect of age on a person’s compensation . You obtain R2 of 27%. What does this mean?

Let’s try to think over it graphically.


In this example, R² as 27%, says, only 27% of variance in compensation is explained by Age. In other words, if you know a person’s age, you’ll have 27% information to make an accurate prediction about their compensation.

Now, let’s take an additional variable as ‘time spent with the company’ to determine the current compensation. By this, R2 value increases to 37%. How do we interpret this value now?

Let’s understand this graphically once again:


Notice that a person’s time with company holds only 10% responsible for his/her earning by profession. In other words, by adding this variable to our study, we improved our understanding of their compensation from 27% to 37%.

Therefore, we learnt, by using two variables rather than one, improved the ability to make accurate predictions about a person’s salary.

Things get much more complicated when your multiple independent variables are related to with each other. This phenomenon is known as Multicollinearity. This is undesirable.  To avoid such situation, it is advisable to look for Variance Inflation Factor (VIF). For no multicollinearity, VIF should be ( VIF < 2). In case of high VIF, look for correlation table to find highly correlated variables and drop one of correlated ones.

Along with multi-collinearity, regression suffers from Autocorrelation, Heteroskedasticity.

In an multiple regression model, we try to predict


Here, b1, b2, b3 …bk are slopes for each independent variables X1, X2, X3….Xk and a is intercept.

Example: Net worth = a+ b1 (Age) +b2 (Time with company)


How to implement regression in Python and R?

Linear regression has commonly known implementations in R packages and Python scikit-learn. Let’s look at the code of loading linear regression model in R and Python below:

Python Code

#Import Library
#Import other necessary libraries like pandas, numpy
from sklearn import linear_model
#Load Train and Test datasets
#Identify feature and response variable(s) and values must be numeric and numpy arrays
# Create linear regression object
linear = linear_model.LinearRegression()
# Train the model using the training sets and check score
linear.fit(x_train, y_train)
linear.score(x_train, y_train)
#Equation coefficient and Intercept
print('Coefficient: \n', linear.coef_)
print('Intercept: \n', linear.intercept_)
#Predict Output
predicted= linear.predict(x_test)


R Code

#Load Train and Test datasets
#Identify feature and response variable(s) and values must be numeric
x_train <- input_variables_values_training_datasets
y_train <- target_variables_values_training_datasets
x_test <- input_variables_values_test_datasets
x <- cbind(x_train,y_train)
# Train the model using the training sets and check score
linear <- lm(y_train ~ ., data = x)
#Predict Output
predicted= predict(linear,x_test)

End Notes

In this article, we looked at linear regression from basics followed by methods to find best fit line, evaluation metric, multi-variate regression and methods to implement in python and R. If you are new to data science, I’d recommend you to master this algorithm, before proceeding to the higher ones.

Did you find this article helpful? Please share your opinions / thoughts in the comments section below.

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  • Aiswarya says:

    Well written article. But i couldn’t understand the concept of multicollinearity. Do you mean to say that if two variables are highly correlated, instead of taking both the variables into consideration, take only one of them? If we are to drop one of the variables, how do we choose which to drop? And what happens if we take both of them??

    • Sunil Ray says:

      Hi Aiswarya,


      Multicollinearity causes when two or more predictors are correlated. We should fix it because it can increase the variance of the coefficient estimates and make the estimates very sensitive to minor changes in the model. The result is that the coefficient estimates are unstable and difficult to interpret.

      There are various methods to deal with Multicollinearity:
      We can fix it using various methods, let’s look at some of the methods:
      • Drop one of the collinear variable based on statistical significance to explain target variable.
      • You can also remove multicollinearity based on VIF (Statistical metrics). Remove only one variable with the highest VIF value and it should be greater than 5, because if it’s less than 5 then your model is not suffering from problem of multi collinearity. After removal of the variable with highest VIF run your model again and check if VIF for all the variables is under 5 if not repeat the above process.
      • Other solution will be to use Principle Component Analysis, which will automatically convert multi collinear variable into one single variable.

      Hope this help!


  • Shashi says:

    This article is really helpful…i appreciate your efforts…Thanks Sunil

  • hemanth varma says:

    Perfectly explained and some of my assumptions and hurdles where clarified with this beautifully tailored article 🙂

    Thank you Sunil.

    If Linear Regression summary is interpreted that would be very much helpful to people like me who just got started into data analytics 🙂

  • Sunil Ray says:

    Thanks Hemanth!

    Feedback taken, will discuss this in future post!

  • Sagar says:

    In formula of R^2, shouldn`t it be like this ( subtracting your formula from 1 ) =>

    r^2= 1 – (sum(actual – predicted)^2/sum(actual – mean)^2)

    Please correct me if I am wrong.

  • Ramdas says:

    Excellent article, i have a quick question: How is Ymean calculated in the calculation of R2. Is it average of just the actual values of y?

  • Trinadh says:

    Hi Sunil,

    You done a great job in breaking down the steps for building the regression. Very helpful article and thanks for your efforts.

  • Deeksith says:

    Really liked this article. I have been following this website for a while, It would really help if there is a series of posts that can help students ramp up on various topics. I am a current student in analytics and would love to see something like that. Appreciate your efforts !

  • Sunil Ray says:



    We do have the road map for various topics(Python, SAS, R, Weka, Machine Learning, Qlikview and Tableau). You can refer below link for same!



  • Chandrashekhar says:

    Good job!!! It’s really helpful

  • Ankita Singh says:

    Perfectly Explained!

  • Vinitha Liyanage says:

    Your explanation makes easy to understand how each variable contribute to the R2.
    Thank you very much.

  • Nipun says:

    Hi Sunil,

    where can I find the train and test datasets?


  • Nipun says:

    Hi Sunil,

    I am a lil confused. In the above article you mentioned that if VIF is less than two, then the model doesn’t suffer from multicollinearity, however in your first comment you also mentioned that the VIF should be less than 5.

    So, if I have a VIF value in between 2 and 5, then dies my model suffer from multicollinearity?


  • akash9129 says:

    HI Sunil,

    I have a doubt regarding the term ‘Actual’. The term actual values actually refer to the values that we receive in real life? For example, say sales data, and the model predicts an amount but after a few days it turns out to be slightly lesser or higher, so this lesser or higher is the actual data, if i am not wrong? This is for clarity purpose


  • Parakram says:

    Properly structured and to the point explanation of the topic, Thanks

  • Ramakant sharma says:

    please share how to find the right coefficients for minimum sum of squared errors:

    1. OLS
    2.gradient Desent.

    if possible.

    BTW it’s a great article.

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